Stem-loop dme-mir-980

Accession

MI0005837

Description

Drosophila melanogaster dme-mir-980 precursor miRNA mir-980

Gene
family

RF03278; mir-980

Literature search

3 open access papers mention dme-mir-980
(163 sentences)

Sequence

33128 reads, 355 reads per million, 46 experiments

aguugauuguaugucAGUUUUUCAUUUGGCCUGGCUAGCuuacuccuuuuuaaauauugcUAGCUGCCUUGUGAAGGGCUUAcguguaauugcaguuc
....((((((((((.((((((((((..(((..(((((((...................))))))))))..)))))))))).)))))))))).......

Structure

---aguu          c          UU   CU       uuacuccu 
       gauuguaugu AGUUUUUCAU  GGC  GGCUAGC        u
       |||||||||| ||||||||||  |||  |||||||        u
       uuaaugugcA UCGGGAAGUG  CCG  UCGAUcg        u
cuugacg          U          UU   --       uuauaaau 

Annotation confidence Medium

Genome context

chrX: 280172-280269 [-]

Mature dme-miR-980-3p

• Accession: MIMAT0005496
• Description: Drosophila melanogaster dme-miR-980-3p mature miRNA
• Sequence: 61 - UAGCUGCCUUGUGAAGGGCUUA - 82
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-980-5p

• Accession: MIMAT0020877
• Description: Drosophila melanogaster dme-miR-980-5p mature miRNA
• Sequence: 16 - AGUUUUUCAUUUGGCCUGGCUAGC - 39
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879