Stem-loop dme-mir-981

Accession

MI0005838

Description

Drosophila melanogaster dme-mir-981 precursor miRNA mir-981

Gene
family

RF01926; mir-981

Literature search

5 open access papers mention dme-mir-981
(5 sentences)

Sequence

69547 reads, 1669 reads per million, 48 experiments

aaacauccucacugaaguCGGGUUUCGUUAGCAGCGGGCUguuuuaauaaauucaacaagUUCGUUGUCGACGAAACCUGCAugcuguguggaaaau
.....(((.(((....(((((((((((((.(((((((((((((...........))).)))))))))).))))))))))).))...))).)))....

Structure

aaaca   u   ugaa  -           A          -   uuaa 
     ucc cac    gu CGGGUUUCGUU GCAGCGGGCU guu    u
     ||| |||    || ||||||||||| |||||||||| |||    a
     agg gug    uA GUCCAAAGCAG UGUUGCUUga caa    a
-uaaa   u   -ucg  C           C          a   cuua 

Annotation confidence Medium

Genome context

chrX: 1788861-1788957 [-]

Mature dme-miR-981-3p

• Accession: MIMAT0005497
• Description: Drosophila melanogaster dme-miR-981-3p mature miRNA
• Sequence: 61 - UUCGUUGUCGACGAAACCUGCA - 82
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-981-5p

• Accession: MIMAT0020878
• Description: Drosophila melanogaster dme-miR-981-5p mature miRNA
• Sequence: 19 - CGGGUUUCGUUAGCAGCGGGCU - 40
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879