Stem-loop dme-mir-929

Accession

MI0005853

Description

Drosophila melanogaster dme-mir-929 precursor miRNA mir-929

Gene
family

RF00947; mir-929

Literature search

1 open access papers mention dme-mir-929
(1 sentences)

Sequence

4070 reads, 87 reads per million, 47 experiments

aguccugguggagcucAAAUUGACUCUAGUAGGGAGUCcuuuaaugagcgaCUCCCUAACGGAGUCAGAUUGagcugcaaaggagcga
..((((..((.(((((((.((((((((..((((((((((((....))).)))))))))..)))))))).))))))).)).))))....

Structure

--ag    gg  g       A        AG         -   u 
    uccu  ug agcucAA UUGACUCU  UAGGGAGUC cuu a
    ||||  || ||||||| ||||||||  ||||||||| |||  
    agga  ac ucgaGUU GACUGAGG  AUCCCUCag gag a
agcg    -a  g       A        CA         c   u 

Annotation confidence High

Genome context

chr3R: 4295369-4295456 [+]

Mature dme-miR-929-3p

• Accession: MIMAT0005511
• Description: Drosophila melanogaster dme-miR-929-3p mature miRNA
• Sequence: 52 - CUCCCUAACGGAGUCAGAUUG - 72
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-929-5p

• Accession: MIMAT0020892
• Description: Drosophila melanogaster dme-miR-929-5p mature miRNA
• Sequence: 17 - AAAUUGACUCUAGUAGGGAGUC - 38
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879