Stem-loop dme-mir-995

Accession

MI0005856

Description

Drosophila melanogaster dme-mir-995 precursor miRNA mir-995

Gene
family

RF01996; mir-995

Literature search

4 open access papers mention dme-mir-995
(17 sentences)

Sequence

215537 reads, 3613.0 reads per million, 51 experiments

caccugcaccccgcaGCCCGAAUUAUGUGGGAGCUGCGCcguuuccguaauccgUAGCACCACAUGAUUCGGCUUCgugguacaggauau
..((((.(((.((.((((.(((((((((((..((((((..(((.....))).)))))).))))))))))))))).)).))).))))....

Structure

--ca    c   c  c    C           GA      Cc   u 
    ccug acc cg aGCC GAAUUAUGUGG  GCUGCG  guu c
    |||| ||| || |||| |||||||||||  ||||||  ||| c
    ggac ugg gC UCGG CUUAGUACACC  CGAUgc  uaa g
uaua    a   u  U    -           -A      -c   u 

Annotation confidence High

Genome context

chr3R: 20735923-20736012 [+]

Mature dme-miR-995-5p

• Accession: MIMAT0010206
• Description: Drosophila melanogaster dme-miR-995-5p mature miRNA
• Sequence: 16 - GCCCGAAUUAUGUGGGAGCUGCGC - 39
• Evidence: experimental ; 454 [3]

Mature dme-miR-995-3p

• Accession: MIMAT0005514
• Description: Drosophila melanogaster dme-miR-995-3p mature miRNA
• Sequence: 55 - UAGCACCACAUGAUUCGGCUUC - 76
• Evidence: experimental ; 454 [1-3], Illumina [2]

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879


3. PubMed ID: 18463636
   Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
   "Kawamura Y, Saito K, Kin T, Ono Y, Asai K, Sunohara T, Okada TN, Siomi MC, Siomi H"
   "Nature (2008) 453:793-797