Stem-loop tae-MIR164

Accession

MI0006173

Description

Triticum aestivum tae-MIR164 precursor miRNA

Literature search

34 open access papers mention tae-MIR164
(191 sentences)

Sequence

390713 reads, 3609.0 reads per million, 235 experiments

ggUGGAGAAGCAGGGCACGUGCAuccauuuccagcucggcauucccggcguccggccggccggcugccgcggccuugccuggcuggguagugcgucgcucgauccggccgugcgccggcggccggcccuugcaugCAUGUGCCUUUCUUCUCCACC
((((((((((.(((((((((((((.((......((.((((....(((((((.(((((((.((((((((.(((((......)))))))))))........))..))))))).)))))))..))))))...)).))))))))))))).))))))))))

Structure

          C             c  uuucca  u    auuc       c       -c  --------      g     uu 
ggUGGAGAAG AGGGCACGUGCAu ca      gc cggc    ccggcgu cggccgg  cg        gcugcc cggcc  g
|||||||||| ||||||||||||| ||      || ||||    ||||||| |||||||  ||        |||||| |||||   
CCACCUCUUC UUCCGUGUACgua gu      cg gccg    ggccgcg gccggcc  gc        ugaugg gucgg  c
          U             c  ---ucc  -    --gc       u       ua  ucgcugcg      -     uc 

Annotation confidence High

Comments

The mature sequence cloned in [1] has a U residue at position 14, which is incompatible with the EST assembly and the hairpin shown here.

Genome context

Unknown

Mature tae-miR164-5p

• Accession: MIMAT0005346
• Description: Triticum aestivum tae-miR164-5p mature miRNA
• Sequence: 3 - UGGAGAAGCAGGGCACGUGCA - 23
• Evidence: experimental ; cloned [1]

Mature tae-miR164-3p

• Accession: MIMAT0056474
• Description: Triticum aestivum tae-miR164-3p mature miRNA
• Sequence: 136 - CAUGUGCCUUUCUUCUCCACC - 156
• Evidence: experimental ; unknown

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96