Stem-loop tae-MIR399

Accession

MI0006176

Description

Triticum aestivum tae-MIR399 precursor miRNA

Literature search

22 open access papers mention tae-MIR399
(73 sentences)

Sequence

24188 reads, 140 reads per million, 116 experiments

ucgugugugaaucacagggcgcuucucccuuggcacgguggcaugcauguacauaugauggugguagccuggugagcgugcggugcagcuugcuagcaagccgugcgUGCCAAAGGAGAAUUGCCC
...((((.....))))(((((.((((((.((((((((.((((.(((.............(((....)))((((((((.(((...)))))))))))))).))))..)))))))).)))))).)))))

Structure

ucgugugugaaucaca     c      c        -g    a   auguacauaugauggugguagcc        g   g 
                gggcg uucucc uuggcacg  uggc ugc                       uggugagc ugc  
                ||||| |||||| ||||||||  |||| |||                       |||||||| ||| g
                CCCGU AAGAGG AACCGUgc  gccg acg                       aucguucg acg  
----------------     U      A        gu    a   -----------------------        -   u 

Annotation confidence Not enough data

Genome context

1A: 229092696-229092821 [-]

Mature tae-miR399

• Accession: MIMAT0005349
• Description: Triticum aestivum tae-miR399 mature miRNA
• Sequence: 108 - UGCCAAAGGAGAAUUGCCC - 126
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96