Stem-loop tae-MIR399

Accession

MI0006176

Description

Triticum aestivum tae-MIR399 precursor miRNA

Literature search

32 open access papers mention tae-MIR399
(102 sentences)

Sequence

24969 reads, 318.0 reads per million, 209 experiments

ucgugugugaaucacaGGGCGCUUCUCCCUUGGCACGguggcaugcauguacauaugauggugguagccuggugagcgugcggugcagcuugcuagcaagccgugcgUGCCAAAGGAGAAUUGCCC
...((((.....))))(((((.((((((.((((((((.((((.(((.............(((....)))((((((((.(((...)))))))))))))).))))..)))))))).)))))).)))))

Structure

ucgugugugaaucaca     C      C        -g    a   auguacauaugauggugguagcc        g   g 
                GGGCG UUCUCC UUGGCACG  uggc ugc                       uggugagc ugc  
                ||||| |||||| ||||||||  |||| |||                       |||||||| ||| g
                CCCGU AAGAGG AACCGUgc  gccg acg                       aucguucg acg  
----------------     U      A        gu    a   -----------------------        -   u 

Annotation confidence High

Genome context

1A: 229092696-229092821 [-]

Mature tae-miR399-5p

• Accession: MIMAT0056475
• Description: Triticum aestivum tae-miR399-5p mature miRNA
• Sequence: 17 - GGGCGCUUCUCCCUUGGCACG - 37
• Evidence: experimental ; unknown

Mature tae-miR399-3p

• Accession: MIMAT0005349
• Description: Triticum aestivum tae-miR399-3p mature miRNA
• Sequence: 108 - UGCCAAAGGAGAAUUGCCC - 126
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96