Stem-loop tae-MIR1117

Accession

MI0006179

Description

Triticum aestivum tae-MIR1117 precursor miRNA

Literature search

8 open access papers mention tae-MIR1117
(25 sentences)

Sequence

56809 reads, 1704.0 reads per million, 231 experiments

guuugaaaaugggaccuuUAGUACCGGUUCGUGGCACGAACCgggacuaaaggucucaaccccauuaguuccGGUUCGUGCCACAAACCGcgacuaaaagggaggagcuuuagucgc
...(((....((..((((((((..(((((.((((((((((((((((((((.((........)).)))))))))))))))))))).)))))..)))).....))))..))....))).

Structure

guu   aaau  ga    -----    AC     C                    a  ucu 
   uga    gg  ccuu     UAGU  CGGUU GUGGCACGAACCgggacuaa gg   c
   |||    ||  ||||     ||||  ||||| |||||||||||||||||||| ||    
   gcu    uc  ggag     auca  GCCAA CACCGUGCUUGGccuugauu cc   a
--c   gauu  ga    ggaaa    gc     A                    a  cca 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR501 in [1]. miR1117 is unrelated to mammalian miR-501;

Genome context

3B: 744964271-744964387 [+]

Mature tae-miR1117-5p

• Accession: MIMAT0005352
• Description: Triticum aestivum tae-miR1117-5p mature miRNA
• Sequence: 19 - UAGUACCGGUUCGUGGCACGAACC - 42
• Evidence: experimental ; cloned [1]

Mature tae-miR1117-3p

• Accession: MIMAT0056477
• Description: Triticum aestivum tae-miR1117-3p mature miRNA
• Sequence: 73 - GGUUCGUGCCACAAACCG - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96