Stem-loop tae-MIR1117

Accession

MI0006179

Description

Triticum aestivum tae-MIR1117 precursor miRNA

Literature search

7 open access papers mention tae-MIR1117
(18 sentences)

Sequence

5966 reads, 30 reads per million, 115 experiments

guuugaaaaugggaccuuUAGUACCGGUUCGUGGCACGAACCgggacuaaaggucucaaccccauuaguuccgguucgugccacaaaccgcgacuaaaagggaggagcuuuagucgc
...(((....((..((((((((..(((((.((((((((((((((((((((.((........)).)))))))))))))))))))).)))))..)))).....))))..))....))).

Structure

guu   aaau  ga    -----    AC     C                    a  ucu 
   uga    gg  ccuu     UAGU  CGGUU GUGGCACGAACCgggacuaa gg   c
   |||    ||  ||||     ||||  ||||| |||||||||||||||||||| ||    
   gcu    uc  ggag     auca  gccaa caccgugcuuggccuugauu cc   a
--c   gauu  ga    ggaaa    gc     a                    a  cca 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR501 in [1]. miR1117 is unrelated to mammalian miR-501;

Genome context

3B: 744964271-744964387 [+]

Mature tae-miR1117

• Accession: MIMAT0005352
• Description: Triticum aestivum tae-miR1117 mature miRNA
• Sequence: 19 - UAGUACCGGUUCGUGGCACGAACC - 42
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96