Stem-loop tae-MIR1118

Accession

MI0006180

Description

Triticum aestivum tae-MIR1118 precursor miRNA

Literature search

4 open access papers mention tae-MIR1118
(5 sentences)

Sequence

3872 reads, 83.0 reads per million, 218 experiments

gaagcacguggauagaggaagCACUACAUUAUGGAAUGGAGGGAguauguuguaggcaaugauuguuugccuugaagauuuuaUAGAUCCUGCUCUGGUCUuucugauuuugucuguuccuuuuuuuuauguuugguucg
(((.((((((((.(((((((.((..(((..((((((.(((.((((((......((((((.......))))))....(((((...))))).))))))..))))))).))..))).)))))))))..)))))))..).))).

Structure

-   g --       -u       g  CU   UU  -    U   -G      uguuguaggcaaugauuguuugccuugaa     u 
 gaa c  acgugga  agaggaa CA  ACA  AU GGAA GGA  GGAgua                             gauuu  
 ||| |  |||||||  ||||||| ||  |||  || |||| |||  ||||||                             ||||| a
 cuu g  uguauuu  uuuccuu gu  ugu  ua ucuu UCU  UCUCGU                             CUAGA  
g   g uu       uu       -  -c   uu  g    -   GG      ----------------------------C     U 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR502 in [1]. miR1118 is unrelated to mammalian miR-502;

Genome context

3A: 117818485-117818624 [-]

Mature tae-miR1118-5p

• Accession: MIMAT0005353
• Description: Triticum aestivum tae-miR1118-5p mature miRNA
• Sequence: 22 - CACUACAUUAUGGAAUGGAGGGA - 44
• Evidence: experimental ; cloned [1], Northern [1]

Mature tae-miR1118-3p

• Accession: MIMAT0056478
• Description: Triticum aestivum tae-miR1118-3p mature miRNA
• Sequence: 84 - UAGAUCCUGCUCUGGUCU - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96