Stem-loop tae-MIR1119

Accession

MI0006181

Description

Triticum aestivum tae-MIR1119 precursor miRNA

Sequence

869 reads, 105.0 reads per million, 124 experiments

agcgucagcgugugaggcgccagcgcgcgcggaggaggagcuggcugggucagcgucgacggcggcggccgugugcuccuacgUGGCACGGCGUGAUGCUGAGUCAGccaguggaguggugcuacuuuuuaCUAGGUGUGGAGUGGGAGUGCUaugcgcggggucgcgugacgugg
.(((((..((((((..((....)).)))))).....((.((((((...)))))).)).(((((....)))))(((((((((((((((((.((....(((((.......)))))..)).)))))))..(((((.....)))))))))))))))...(((((....))))))))))..

Structure

-a     agcgugugaggcgccagcgcgcgcggaggaggagcuggcugggucagcgucgacggcggcggccgu          -----------------       G  GUGA     AG 
  gcguc                                                                  gugcuccuac                 gUGGCAC GC    UGCUG  U
  |||||                                                                  ||||||||||                 ||||||| ||    |||||  C
  ugcag                                                                  CGUGAGGGUG                 caucgug ug    gugac  A
gg     -------------------------------------------------ugcgcuggggcgcguaU          AGGUGUGGAUCauuuuu       g  --ag     cG 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR503 in [1]. miR1119 is unrelated to mammalian miR-503;

Genome context

Unknown

Mature tae-miR1119-5p

• Accession: MIMAT0005354
• Description: Triticum aestivum tae-miR1119-5p mature miRNA
• Sequence: 84 - UGGCACGGCGUGAUGCUGAGUCAG - 107
• Evidence: experimental ; cloned [1]

Mature tae-miR1119-3p

• Accession: MIMAT0056479
• Description: Triticum aestivum tae-miR1119-3p mature miRNA
• Sequence: 132 - CUAGGUGUGGAGUGGGAGUGCU - 153
• Evidence: experimental ; unknown

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96