Stem-loop tae-MIR1121

Accession

MI0006183

Description

Triticum aestivum tae-MIR1121 precursor miRNA

Literature search

5 open access papers mention tae-MIR1121
(6 sentences)

Sequence

17943 reads, 341.0 reads per million, 231 experiments

uauauAUGUACUCCCUCUGUAAAGAAauauuagaguguuuagaucacuuaAGUAGUGAUCUAAACGCUCUUAuauuucuuuacggagggaguacugua
..((((.(((((((((((((((((((((((.(((((((((((((((((.....))))))))))))))))).)))))))))))))))))))))))))))

Structure

ua    U                       u                 u 
  uauA GUACUCCCUCUGUAAAGAAauau agaguguuuagaucacu a
  |||| ||||||||||||||||||||||| ||||||||||||||||| A
  augu caugagggaggcauuucuuuauA UCUCGCAAAUCUAGUGA G
--    -                       U                 U 

Annotation confidence Medium

Comments

Yao et al. misname this sequence miR505 in [1]. miR1121 is unrelated to mammalian miR-505;

Genome context

Unknown

Mature tae-miR1121-5p

• Accession: MIMAT0056481
• Description: Triticum aestivum tae-miR1121-5p mature miRNA
• Sequence: 6 - AUGUACUCCCUCUGUAAAGAA - 26
• Evidence: experimental ; unknown

Mature tae-miR1121-3p

• Accession: MIMAT0005356
• Description: Triticum aestivum tae-miR1121-3p mature miRNA
• Sequence: 51 - AGUAGUGAUCUAAACGCUCUUA - 72
• Evidence: experimental ; cloned [1], RTPCR [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96