Stem-loop tae-MIR1122a

Accession

MI0006184

Description

Triticum aestivum tae-MIR1122a precursor miRNA

Literature search

7 open access papers mention tae-MIR1122a
(34 sentences)

Sequence

145412 reads, 2954.0 reads per million, 235 experiments

auaaguacucccucuguuccuaaaUACUCCCUCCGUCCCAAAAauuuuggcuuagauuugucuaaauacguauguaucaagucauguuuuaguauUAGAUACAUCCGUAUCUAGAcuaaucuaagacaagaauuuugggacggagggaguauaagucuuuuuagagauuccacuacaaacuacauacggauguauauagacauauuuuagaguguagauucacucauuuuacuucguauguaguccauaguggaaucucuaagaaggcauauauuuaggaacagaggguguacca
....((((.((((((((((((((((((((((((((((((((((.(((((.((((((((...(((((.((((((.......)).))))))))).........................)))))))).))))).))))))))))))))))))))..(((((((((((((((((((((...((((((((((((.(((...............(((((......)))))....)))))))))))))))...)))))))))))))))))))))......)))))))))))))).))))..

Structure

auaa    u              --------------------------------------------------------------------------------------------------------------------------                    a     g        ----------------------ugu     u    -  gu 
    guac cccucuguuccuaa                                                                                                                          aUACUCCCUCCGUCCCAAAA uuuug cuuagauu                         cuaaa acgu au  a
    |||| ||||||||||||||                                                                                                                          |||||||||||||||||||| ||||| ||||||||                         ||||| |||| ||  u
    caug gggagacaaggauu                                                                                                                          uaugagggaggcaggguuuu agaac gaaucuaa                         gauuu ugua ug  c
--ac    u              uauauacggaagaaucucuaaggugauaccugauguaugcuucauuuuacucacuuagaugugagauuuuauacagauauauguaggcauacaucaaacaucaccuuagagauuuuucugaa                    a     a        ucAGAUCUAUGCCUACAUAGAUuau     -    c  aa 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR506 in [1]. miR1122 is unrelated to mammalian miR-506;

Genome context

4B: 268039586-268039880 [-]

Mature tae-miR1122a-5p

• Accession: MIMAT0056482
• Description: Triticum aestivum tae-miR1122a-5p mature miRNA
• Sequence: 25 - UACUCCCUCCGUCCCAAAA - 43
• Evidence: experimental ; unknown

Mature tae-miR1122a-3p

• Accession: MIMAT0005357
• Description: Triticum aestivum tae-miR1122a-3p mature miRNA
• Sequence: 96 - UAGAUACAUCCGUAUCUAGA - 115
• Evidence: experimental ; cloned [1], RTPCR [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96