Stem-loop tae-MIR1123

Accession

MI0006185

Description

Triticum aestivum tae-MIR1123 precursor miRNA

Literature search

2 open access papers mention tae-MIR1123
(2 sentences)

Sequence

56439 reads, 1031.0 reads per million, 234 experiments

aaaaaaauuauaugagaccaggucucauauaaaucaggugagacccgcccugaugaaugacaugUGGCAUUCACAAAUCACAAAGcaucuaaucucucccccccugauuucagguggggggugggguggaugcuuugugauuugugaaugacacgugucauccaucaggaugggucucaccugcuaaUCCGUGAGACCUGGUCUCAUAGAauuuuuuu
(((((((((.((((((((((((((((((......(((((((((((((.(((((((.((((((((((.((((((((((((((((((((((((.((((((((((((((....)))).)))))).)))))))))))))))))))))))))))).)))))))))).))))))).))))))))))))).......)))))))))))))))))).)))))))))

Structure

         a                  -auaaau             c       a          G                        a    -      -    a 
aaaaaaauu uaugagaccaggucucau       caggugagacccg ccugaug augacaugUG CAUUCACAAAUCACAAAGcaucua ucuc uccccc ccug u
||||||||| ||||||||||||||||||       ||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||| |||||| ||||  
uuuuuuuaA AUACUCUGGUCCAGAGUG       guccacucugggu ggacuac uacugugcac guaaguguuuaguguuucguaggu gggg gggggg ggac u
         G                  CCUaauc             a       c          a                        -    u      u    u 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR507 in [1]. miR1123 is unrelated to mammalian miR-507;

Genome context

5B: 186584681-186584898 [-]

Mature tae-miR1123-5p

• Accession: MIMAT0056483
• Description: Triticum aestivum tae-miR1123-5p mature miRNA
• Sequence: 65 - UGGCAUUCACAAAUCACAAAG - 85
• Evidence: experimental ; unknown

Mature tae-miR1123-3p

• Accession: MIMAT0005358
• Description: Triticum aestivum tae-miR1123-3p mature miRNA
• Sequence: 188 - UCCGUGAGACCUGGUCUCAUAGA - 210
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96