Stem-loop tae-MIR1124

Accession

MI0006186

Description

Triticum aestivum tae-MIR1124 precursor miRNA

Literature search

1 open access papers mention tae-MIR1124
(2 sentences)

Sequence

386 reads, 106.0 reads per million, 60 experiments

auuACAUGACUCAAAGGAACGGCCCUGGgagcucgauccuucucacaucccgccacgccauugucgcguccauccccacgacGCAGGACGUGAAGAGCGAGUCCaaggccggaagcuagacucgguacu
..(((.(((.((..((...(((((.(((..(((((...(((.((((.(((.((.........((((.(........).)))))).))).)))).))))))))))).)))))....)).)).))))))..

Structure

au   A   C  AA  -GAA     C   ga     auc   c    a   c  cacgccauu    c ucc 
  uAC UGA UC  AG    CGGCC UGG  gcucg   cuu ucac ucc gc         gucg g   a
  ||| ||| ||  ||    ||||| |||  |||||   ||| |||| ||| ||         |||| |    
  aug gcu ag  uc    gccgg aCC  UGAGC   GAG AGUG AGG CG         cagc c   u
uc   -   c  -a  gaag     a   --     ---   A    C   A  ---------    a ccc 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR508 in [1]. miR1124 is unrelated to mammalian miR-508;

Genome context

Unknown

Mature tae-miR1124-5p

• Accession: MIMAT0056484
• Description: Triticum aestivum tae-miR1124-5p mature miRNA
• Sequence: 4 - ACAUGACUCAAAGGAACGGCCCUGG - 28
• Evidence: experimental ; unknown

Mature tae-miR1124-3p

• Accession: MIMAT0005359
• Description: Triticum aestivum tae-miR1124-3p mature miRNA
• Sequence: 83 - GCAGGACGUGAAGAGCGAGUCC - 104
• Evidence: experimental ; cloned [1], RTPCR [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96