Stem-loop tae-MIR1125

Accession

MI0006187

Description

Triticum aestivum tae-MIR1125 precursor miRNA

Literature search

7 open access papers mention tae-MIR1125
(9 sentences)

Sequence

22662 reads, 354.0 reads per million, 232 experiments

uuuggccguaaauuuAACCAACGAGACCAACUGCGGCGGgaacaaaaauuauaucgcugaauuauaucaaaaauacgaauucaguagcauagguuuugcucccgccacauUCGGUCUUGUUGGUUAAAUUUACGgucaaa
.(((((((((((((((((((((((((((...((.(((((((.(((((.((((...((((((((.(((.....)))..))))))))...)))).))))).))))))).))...))))))))))))))))))))))))))).

Structure

u                           AAC  C       a     a    auc        -a   c 
 uuggccguaaauuuAACCAACGAGACC   UG GGCGGga caaaa uuau   gcugaauu  uau a
 |||||||||||||||||||||||||||   || ||||||| ||||| ||||   ||||||||  ||| a
 aacugGCAUUUAAAUUGGUUGUUCUGG   ac ccgcccu guuuu gaua   ugacuuaa  aua a
a                           CUu  a       c     g    cga        gc   a 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR509 in [1]. miR1125 is unrelated to mammalian miR-509;

Genome context

1B: 93806865-93807004 [+]

Mature tae-miR1125-5p

• Accession: MIMAT0005360
• Description: Triticum aestivum tae-miR1125-5p mature miRNA
• Sequence: 16 - AACCAACGAGACCAACUGCGGCGG - 39
• Evidence: experimental ; cloned [1], Northern [1]

Mature tae-miR1125-3p

• Accession: MIMAT0056485
• Description: Triticum aestivum tae-miR1125-3p mature miRNA
• Sequence: 111 - UCGGUCUUGUUGGUUAAAUUUACG - 134
• Evidence: experimental ; unknown

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96