Stem-loop tae-MIR1127a

Accession

MI0006189

Description

Triticum aestivum tae-MIR1127a precursor miRNA

Literature search

9 open access papers mention tae-MIR1127a
(36 sentences)

Sequence

67139 reads, 1616.0 reads per million, 234 experiments

acauuagauguacucaacuacUCCUUCCGUUCGGAAUUACucguccaagaaauaaauguaucuaaaugcauuuuaguuguagauacauccauuuuuaucauuuuugugaCAAGUAAUUCCGAACGGAGGGAGUauauucuaauguuggauc
((((((((.(((......(((((((((((((((((((((((.((((((((((((((((((((((...((......))..)))))))))......))))..)))))).))).))))))))))))))))))))))))))))))))))......

Structure

------        u   cucaac                       c   -      --    ------         aau  au 
      acauuaga gua      uacUCCUUCCGUUCGGAAUUACu guc caagaa  auaa      auguaucua   gc  u
      |||||||| |||      ||||||||||||||||||||||| ||| ||||||  ||||      |||||||||   ||   
      uguaaucu uau      aUGAGGGAGGCAAGCCUUAAUGA Cag guuuuu  uauu      uacauagau   ug  u
cuaggu        -   ------                       A   u      ac    uuuacc         -gu  au 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR511 in [1]. miR1127 is unrelated to mammalian miR-511;

Genome context

4B: 126057135-126057285 [+]

Mature tae-miR1127a-5p

• Accession: MIMAT0005362
• Description: Triticum aestivum tae-miR1127a-5p mature miRNA
• Sequence: 22 - UCCUUCCGUUCGGAAUUAC - 40
• Evidence: experimental ; cloned [1]

Mature tae-miR1127a-3p

• Accession: MIMAT0056486
• Description: Triticum aestivum tae-miR1127a-3p mature miRNA
• Sequence: 110 - CAAGUAAUUCCGAACGGAGGGAGU - 133
• Evidence: experimental ; unknown

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96