Stem-loop tae-MIR1128

Accession

MI0006190

Description

Triticum aestivum tae-MIR1128 precursor miRNA

Literature search

7 open access papers mention tae-MIR1128
(10 sentences)

Sequence

259325 reads, 3094.0 reads per million, 235 experiments

auaugagagcaugggugagaggugcuuaguUACUACUCCCUCCGUCCGAAAauacuugucaucaaaaugaauaaaaaaggggauguaucuagaacuaaaauacaucuagauacauccccuucuauccauuuugaugacaacuaUUUCCGGACGGAGGGAGUAauugcuucuucuggcuuggcguuuaugu
(((((((.((..((((.(((((.....(((...(((((((((((((((.(((((.((((((((((((((.(((...(((((((((((((((((...........))))))))))))))))).))).)))))))))))))).))))).)))))))))))))))...))).))))).)))).)).)))))))

Structure

       a  au    g     ugcuu   UAC               A     c              a   aaa                 acua 
auaugag gc  gggu agagg     agu   UACUCCCUCCGUCCG AAaua uugucaucaaaaug aua   aaggggauguaucuaga    a
||||||| ||  |||| |||||     |||   ||||||||||||||| ||||| |||||||||||||| |||   |||||||||||||||||    a
uguauuu cg  uucg ucuuc     ucg   AUGAGGGAGGCAGGC UUUau aacaguaguuuuac uau   uuccccuacauagaucu    a
       g  -g    g     ----u   uua               C     c              c   --c                 acau 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR512 in [1]. miR1128 is unrelated to mammalian miR-512;

Genome context

Unknown

Mature tae-miR1128-5p

• Accession: MIMAT0005363
• Description: Triticum aestivum tae-miR1128-5p mature miRNA
• Sequence: 31 - UACUACUCCCUCCGUCCGAAA - 51
• Evidence: experimental ; cloned [1], Northern [1]

Mature tae-miR1128-3p

• Accession: MIMAT0056487
• Description: Triticum aestivum tae-miR1128-3p mature miRNA
• Sequence: 144 - UUUCCGGACGGAGGGAGUA - 162
• Evidence: experimental ; unknown

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96