Stem-loop tae-MIR1133

Accession

MI0006195

Description

Triticum aestivum tae-MIR1133 precursor miRNA

Literature search

6 open access papers mention tae-MIR1133
(13 sentences)

Sequence

58530 reads, 656.0 reads per million, 232 experiments

acuucuuagugauaguggucaauuacauCAUAUACUCCCUCCGUCCGAAAaaguuugucccaagcuuguuccucaaauggauguaucuagcacuaacuugaugcuacAUACAUUCAUUUGAGGGACAcgcuuuuucggauggagggaguaguaauuuugauauacacacugaaguugcua
(((((..((((...((((((((((((......((((((((((((((((((((((.((((((...........((((((((((((((.((((((......).))))).)))))))))))))))))))).)))))))))))))))))))))))))))..)))).))).))))))))).....

Structure

-----     uu    aua   -    --     auCAUA                      u      aagcuuguucc              c     - ua 
     acuuc  agug   gug guca  auuac      UACUCCCUCCGUCCGAAAaagu uguccc           ucaaauggauguau uagca c  a
     |||||  ||||   ||| ||||  |||||      |||||||||||||||||||||| ||||||           |||||||||||||| ||||| |   
     ugaag  ucac   cau uagu  uaaug      augagggagguaggcuuuuucg ACAGGG           AGUUUACUUACAUA aucgu g  c
aucgu     --    --a   a    uu     ------                      c      -----------              c     a uu 

Annotation confidence Medium

Comments

Yao et al. misname this sequence miR517 in [1]. miR1133 is unrelated to mammalian miR-517;

Genome context

2D: 45939207-45939386 [+]

Mature tae-miR1133-5p

• Accession: MIMAT0005368
• Description: Triticum aestivum tae-miR1133-5p mature miRNA
• Sequence: 29 - CAUAUACUCCCUCCGUCCGAAA - 50
• Evidence: experimental ; cloned [1]

Mature tae-miR1133-3p

• Accession: MIMAT0056490
• Description: Triticum aestivum tae-miR1133-3p mature miRNA
• Sequence: 108 - AUACAUUCAUUUGAGGGACA - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96