Stem-loop tae-MIR1135

Accession

MI0006197

Description

Triticum aestivum tae-MIR1135 precursor miRNA

Literature search

10 open access papers mention tae-MIR1135
(20 sentences)

Sequence

178592 reads, 3091.0 reads per million, 235 experiments

cuacucccuccauucggaauuacuugucucggauAUGGAUGUAUCUAGAACUAAAAUAcgucuagauacaucuauuuCUGCGACAAGUAAUUCCGAACGGAgggaguag
(((((((((((.((((((((((((((((.((((.(((((((((((((((.(........)))))))))))))))).)))).)))))))))))))))).)))))))))))

Structure

           a                u    u               A UAA 
cuacucccucc uucggaauuacuuguc cgga AUGGAUGUAUCUAGA C   A
||||||||||| |||||||||||||||| |||| ||||||||||||||| |    
gaugagggAGG AAGCCUUAAUGAACAG GUCu uaucuacauagaucu g   A
           C                C    u               - cAU 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR519 in [1]. miR1135 is unrelated to mammalian miR-519;

Genome context

1A: 203987144-203987252 [-]

Mature tae-miR1135-5p

• Accession: MIMAT0056492
• Description: Triticum aestivum tae-miR1135-5p mature miRNA
• Sequence: 35 - AUGGAUGUAUCUAGAACUAAAAUA - 58
• Evidence: experimental ; unknown

Mature tae-miR1135-3p

• Accession: MIMAT0005370
• Description: Triticum aestivum tae-miR1135-3p mature miRNA
• Sequence: 78 - CUGCGACAAGUAAUUCCGAACGGA - 101
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96