Stem-loop tae-MIR1138

Accession

MI0006200

Description

Triticum aestivum tae-MIR1138 precursor miRNA

Literature search

3 open access papers mention tae-MIR1138
(5 sentences)

Sequence

10099 reads, 227.0 reads per million, 215 experiments

aucuuguauaggUCUGUCUAGGACACAUCUaaaugugacauaacuaugucacaucuaagcugaugucaacucuguuuguggucuauuuuuuuuauccuaguuuuuuuauuucuuauugcuacauuauauauuuguaggaGCUUAGAUGUGACAUCCUUAAAAacaucuagaugugaauuaaacaaacugaucuu
.........((((((((.(((..((((((((.((((....(((..(((((((((((((((((((..(((......)))..)))...................................(((((.........))))).))))))))))))))))..)))...)))).))))))))..))).)))....))))).

Structure

aucuuguau     ----   C   GA        a    gaca   cu                -------------------------------------------------------   gu   cu 
         aggUC    UGU UAG  CACAUCUa augu    uaa  augucacaucuaagcu                                                       gau  caa  c
         |||||    ||| |||  |||||||| ||||    |||  ||||||||||||||||                                                       |||  |||   
         ucuag    aca auu  guguagau uaca    AUU  UACAGUGUAGAUUCGa                                                       cug  guu  u
--------u     ucaa   a   aa        c    -AAA   CC                ggauguuuauauauuacaucguuauucuuuauuuuuuugauccuauuuuuuuuau   gu   ug 

Annotation confidence Low

Comments

Yao et al. misname this sequence miR522 in [1]. miR1138 is unrelated to mammalian miR-522;

Genome context

Unknown

Mature tae-miR1138-5p

• Accession: MIMAT0056495
• Description: Triticum aestivum tae-miR1138-5p mature miRNA
• Sequence: 13 - UCUGUCUAGGACACAUCU - 30
• Evidence: experimental ; unknown

Mature tae-miR1138-3p

• Accession: MIMAT0005373
• Description: Triticum aestivum tae-miR1138-3p mature miRNA
• Sequence: 140 - GCUUAGAUGUGACAUCCUUAAAA - 162
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96