Stem-loop aga-mir-1174

Accession

MI0006237

Description

Anopheles gambiae aga-mir-1174 precursor miRNA

Literature search

8 open access papers mention aga-mir-1174
(15 sentences)

Sequence

318583 reads, 7611.0 reads per million, 24 experiments

gcuacgaucGUGGGUAUUUUAGAUCAUCGACAgaccaaggcacuuucgucacuggcauuguaaggccgagcagaugcggccucaacccaaacccucacccgugguucgcaucugcucccguccagugcccuguccaaccauacugUCAGAUCUACUUCAUACCCAUGaaugguggcg
(((((.(((((((((((..((((((...(((((.....(((......)))...(((((((...((..((((((((((((((.....................)).))))))))))))))...))))))).............))))).))))))....))))))))).)).))))).

Structure

-     g  -         --UU      AUC     accaaggcacuuucgucacu       uaa  cc            -  ucaacccaa 
 gcuac au cGUGGGUAU    UAGAUC   GACAg                    ggcauug   gg  gagcagaugcgg cc         a
 ||||| || |||||||||    ||||||   |||||                    |||||||   ||  |||||||||||| ||         c
 cggug ua GUACCCAUA    AUCUAG   CUguc                    ccgugac   cc  cucgucuacgcu gg         c
g     g  a         CUUC      --A     -------auaccaaccuguc       cug  --            u  ugcccacuc 

Annotation confidence High

Genome context

ref|NC_064601.1|: 9041313-9041489 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aga-mir-1174

Mature aga-miR-1174-5p

• Accession: MIMAT0053025
• Description: Anopheles gambiae aga-miR-1174-5p mature miRNA
• Sequence: 10 - GUGGGUAUUUUAGAUCAUCGACA - 32
• Evidence: experimental ; cloned [1]

Mature aga-miR-1174-3p

• Accession: MIMAT0005524
• Description: Anopheles gambiae aga-miR-1174-3p mature miRNA
• Sequence: 146 - UCAGAUCUACUUCAUACCCAUG - 167
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17933784
   Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
   "Winter F, Edaye S, Huttenhofer A, Brunel C"
   "Nucleic Acids Res (2007) 35:6953-6962