Stem-loop aga-mir-34

Accession

MI0006239

Description

Anopheles gambiae aga-mir-34 precursor miRNA

Literature search

10 open access papers mention aga-mir-34
(27 sentences)

Sequence

138356 reads, 9796.0 reads per million, 24 experiments

gaggcaauauacgcucUGGCAGUGUGGUUAGCUGGUugugugguuuucccaucuucaCAGCCACUAUCCGCCCUGCCGUCgcgcuaaugc
...(((.((..(((..((((((.((((.(((.(((((((((((.....)))....))))))))))).)))).))))))..))).)).)))

Structure

gag   a  ua   uc      U    U   C        ----   u 
   gca ua  cgc  UGGCAG GUGG UAG UGGUugug    ugg u
   ||| ||  |||  |||||| |||| ||| ||||||||    ||| u
   cgu au  gcg  GCCGUC CGCC AUC ACCGACac    acc u
---   a  -c   CU      C    U   -        uucu   c 

Annotation confidence High

Genome context

ref|NC_064601.1|: 28078221-28078310 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aga-mir-34

Mature aga-miR-34-5p

• Accession: MIMAT0005526
• Description: Anopheles gambiae aga-miR-34-5p mature miRNA
• Sequence: 17 - UGGCAGUGUGGUUAGCUGGU - 36
• Evidence: experimental ; cloned [1]

Mature aga-miR-34-3p

• Accession: MIMAT0053027
• Description: Anopheles gambiae aga-miR-34-3p mature miRNA
• Sequence: 58 - CAGCCACUAUCCGCCCUGCCGUC - 80
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17933784
   Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
   "Winter F, Edaye S, Huttenhofer A, Brunel C"
   "Nucleic Acids Res (2007) 35:6953-6962