Stem-loop aga-mir-12

Accession

MI0006240

Description

Anopheles gambiae aga-mir-12 precursor miRNA

Literature search

2 open access papers mention aga-mir-12
(9 sentences)

Sequence

ccggggUGAGUAUUACAUCAGGUACUGGUguguaauuuaaacgaccaucggacaugggggcugcccaacuccucuucuguccccggucaagcuaucaguacuuguguuauacucucc
....((.((((((.(((.((((((((((((.((.........((((...(((((.(((((..........)))))..)))))..))))..))))))))))))))))).)))))).))

Structure

ccgg  U      U   U            u  aauuuaaac    auc     -u     cugc 
    gg GAGUAU ACA CAGGUACUGGUg gu         gacc   ggaca  ggggg    c
    || |||||| ||| |||||||||||| ||         ||||   |||||  |||||     
    cc cucaua ugu guucaugacuau cg         cugg   ccugu  ucucc    c
----  u      u   -            -  -------aa    -cc     cu     ucaa 

Annotation confidence Low

Genome context

chr2R: 37888037-37888153 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aga-mir-12

Mature aga-miR-12

• Accession: MIMAT0005527
• Description: Anopheles gambiae aga-miR-12 mature miRNA
• Sequence: 7 - UGAGUAUUACAUCAGGUACUGGU - 29
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17933784
   Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
   "Winter F, Edaye S, Huttenhofer A, Brunel C"
   "Nucleic Acids Res (2007) 35:6953-6962