Stem-loop mmu-mir-669k

Accession

MI0006279

Symbol

MGI: Mir669k

Description

Mus musculus mmu-mir-669k precursor miRNA

Literature search

11 open access papers mention mmu-mir-669k
(28 sentences)

Sequence

161 reads, 43 reads per million, 31 experiments

ucuuaugcccaccaaaaaUGUGCAUGUGUGUAUAGUUGUGUGCauauucacuucucuauaugaaUAUGCAUAUACACGCAUGCAAacacauucauaggaauggccagagcuauaucucaguuaggag
(((((((.........(((((((((((((((((......(((((((((((..........)))))))))))))))))))))))....))))))))))))(((((....)))))..(((......)))

Structure

----------------------------       cccaccaaa     ----            AGUUGU           cuuc 
                            ucuuaug         aaUGU    GCAUGUGUGUAU      GUGCauauuca    u
                            |||||||         |||||    ||||||||||||      |||||||||||     
                            aggauac         uuaca    CGUACGCACAUA      UACGUAUaagu    c
gaggauugacucuauaucgagaccggua       ---------     caAA            ------           auau 

Annotation confidence Not enough data

Genome context

chr2: 10475300-10475426 [+]

Clustered miRNAs

29 other miRNAs are < 10 kb from mmu-mir-669k

Mature mmu-miR-669k-5p

• Accession: MIMAT0017323
• Description: Mus musculus mmu-miR-669k-5p mature miRNA
• Sequence: 19 - UGUGCAUGUGUGUAUAGUUGUGUGC - 43
• Evidence: experimental ; Illumina [2]

Mature mmu-miR-669k-3p

• Accession: MIMAT0005831
• Description: Mus musculus mmu-miR-669k-3p mature miRNA
• Sequence: 65 - UAUGCAUAUACACGCAUGCAA - 85
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102