Stem-loop mmu-mir-669h

Accession

MI0006289

Symbol

MGI: Mir669h

Description

Mus musculus mmu-mir-669h precursor miRNA

Literature search

11 open access papers mention mmu-mir-669h
(15 sentences)

Sequence

951 reads, 71 reads per million, 90 experiments

ugugaugcccaccaaaaauAUGCAUGGGUGUAUAGUUGAGUGCauauucauuucucuauaugaaUAUGCAUAUACACACAUGCACAcacacacacacucacacacaggaaugacacucguuuauc
(((((...............((((((.((((((......((((((((((((........)))))))))))))))))).)))))).............))))).....((((((...))))))...

Structure

-----------------------     ugcccaccaaaaauA      G      AGUUGA            uuc 
                       uguga               UGCAUG GUGUAU      GUGCauauucau   u
                       |||||               |||||| ||||||      ||||||||||||    
                       acacu               ACGUAC CACAUA      UACGUAUaagua   c
cuauuugcucacaguaaggacac     --cacacacacacAC      A      ------            uau 

Annotation confidence Low

Genome context

chr2: 10518155-10518279 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from mmu-mir-669h

Mature mmu-miR-669h-5p

• Accession: MIMAT0005841
• Description: Mus musculus mmu-miR-669h-5p mature miRNA
• Sequence: 20 - AUGCAUGGGUGUAUAGUUGAGUGC - 43
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature mmu-miR-669h-3p

• Accession: MIMAT0005842
• Description: Mus musculus mmu-miR-669h-3p mature miRNA
• Sequence: 65 - UAUGCAUAUACACACAUGCACA - 86
• Evidence: experimental ; 454 [1], Illumina [2-3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102