Stem-loop mmu-mir-1188

Accession

MI0006290

Symbol

MGI: Mir1188

Description

Mus musculus mmu-mir-1188 precursor miRNA mir-1188

Gene
family

RF03856; mir-1188

Literature search

2 open access papers mention mmu-mir-1188
(9 sentences)

Sequence

1027 reads, 42 reads per million, 47 experiments

auacucacagucucccagcUGGUGUGAGGUUGGGCCAGGAugaaacccaaggcucUCCGAGGCUCCCCACCACACCCUGCugcugaagacugccuagcaaggcugugccgaguggugugg
.....(((((((((.((((.((((((..(..(((((.(((.((..(....)..)))))..)))))..)..))))))..))))..).)))))((((....))))...(((....)))))).

Structure

auacu   -------------------------     - -c    -U      AG UU     -A   u  aa c 
     cac                         agucu c  cagc  GGUGUG  G  GGGCC  GGA ga  c c
     |||                         ||||| |  ||||  ||||||  |  |||||  ||| ||  |  
     gug                         ucaga g  guCG  CCACAC  C  CUCGG  CCU cu  g a
----g   uggugagccgugucggaacgauccg     a uc    UC      CA CC     AG   -  cg a 

Annotation confidence Not enough data

Genome context

chr12: 109611822-109611941 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mmu-mir-1188

Mature mmu-miR-1188-5p

• Accession: MIMAT0005843
• Description: Mus musculus mmu-miR-1188-5p mature miRNA
• Sequence: 20 - UGGUGUGAGGUUGGGCCAGGA - 40
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature mmu-miR-1188-3p

• Accession: MIMAT0017328
• Description: Mus musculus mmu-miR-1188-3p mature miRNA
• Sequence: 56 - UCCGAGGCUCCCCACCACACCCUGC - 80
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102