Stem-loop mmu-mir-1198

Accession

MI0006306

Symbol

MGI: Mir1198

Description

Mus musculus mmu-mir-1198 precursor miRNA

Literature search

2 open access papers mention mmu-mir-1198
(3 sentences)

Sequence

49525 reads, 79 reads per million, 101 experiments

uuuuuuuucuuuuguuuauuuuguuugugacaguugucuguUAUGUGUUCCUGGCUGGCUUGGuacucauguguagcccAAGCUAGCCUCUAACUCAUGGCagucauccugucucagucuc
........................(((.(((((.((.((((((((.(((...((((((((((((((......)))..)))))))))))...))).)))))))).))..))))).)))....

Structure

uuuuuuuucuuuuguuuauuuugu   u     -u  u        U   CCU           --   uc 
                        uug gacag  ug cuguUAUG GUU   GGCUGGCUUGG  uac  a
                        ||| |||||  || |||||||| |||   |||||||||||  |||   
                        gac cuguc  ac gaCGGUAC CAA   CCGAUCGAAcc  aug  u
--------------------cucu   u     cu  u        U   UCU           cg   ug 

Annotation confidence High

Genome context

chrX: 7807101-7807221 [+]

Mature mmu-miR-1198-5p

• Accession: MIMAT0005859
• Description: Mus musculus mmu-miR-1198-5p mature miRNA
• Sequence: 42 - UAUGUGUUCCUGGCUGGCUUGG - 63
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature mmu-miR-1198-3p

• Accession: MIMAT0017332
• Description: Mus musculus mmu-miR-1198-3p mature miRNA
• Sequence: 80 - AAGCUAGCCUCUAACUCAUGGC - 101
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102