Stem-loop mmu-mir-1199

Accession

MI0006307

Symbol

MGI: Mir1199

Description

Mus musculus mmu-mir-1199 precursor miRNA mir-1199

Gene
family

RF04074; mir-1199

Literature search

3 open access papers mention mmu-mir-1199
(16 sentences)

Sequence

648 reads, 2 reads per million, 38 experiments

agccugcgccggagccggggUCUGAGUCCCGGUCGCGCGGgcgaggaacucauugaguugcgcgUGCGGCCGGUGCUCAGUCGGCccggcuccgguacuccgcugccgcgcgcccugga
..((.((((((((((((((..((((((.(((((((((((.(((....((((...))))))).))))))))))).))))))....))))))))))).....(((....))))))...)).

Structure

ag  --u   ---------------           --gU      C           G   agga    a 
  cc   gcg               ccggagccggg    CUGAGU CCGGUCGCGCG gcg    acuc  
  ||   |||               |||||||||||    |||||| ||||||||||| |||    |||| u
  gg   cgc               ggccucggccC    GACUCG GGCCGGCGUgc cgu    ugag  
-a  ucc   gcgccgucgccucau           GGCU      U           g   ----    u 

Annotation confidence High

Genome context

chr8: 84011515-84011633 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-1199

Mature mmu-miR-1199-5p

• Accession: MIMAT0005860
• Description: Mus musculus mmu-miR-1199-5p mature miRNA
• Sequence: 21 - UCUGAGUCCCGGUCGCGCGG - 40
• Evidence: experimental ; 454 [1], Illumina [2]

Mature mmu-miR-1199-3p

• Accession: MIMAT0017333
• Description: Mus musculus mmu-miR-1199-3p mature miRNA
• Sequence: 65 - UGCGGCCGGUGCUCAGUCGGC - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102