Stem-loop bna-MIR171e

Accession

MI0006454

Description

Brassica napus bna-MIR171e precursor miRNA

Literature search

5 open access papers mention bna-MIR171e
(14 sentences)

Sequence

caauacgagauauuggugugguucaaucagaaaaccacacucuuuuguuguagagaucgguuuguuugaUUGAGCCGUGCCAAUAUCACGag
.....((.((((((((((((((((((((((((((((...((((........))))...))))).))))))))))))))))))))))).))..

Structure

caaua  a                       -     aca    uuu 
     cg gauauuggugugguucaaucaga aaacc   cucu   g
     || ||||||||||||||||||||||| |||||   ||||    
     GC CUAUAACCGUGCCGAGUUaguuu uuugg   gaga   u
---ga  A                       g     cua    ugu 

Annotation confidence Low

Genome context

EM:AC189214: 74569-74660 [-]

Mature bna-miR171e

• Accession: MIMAT0005609
• Description: Brassica napus bna-miR171e mature miRNA
• Sequence: 70 - UUGAGCCGUGCCAAUAUCACG - 90
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823