Stem-loop bna-MIR166c

Accession

MI0006476

Description

Brassica napus bna-MIR166c precursor miRNA

Literature search

9 open access papers mention bna-MIR166c
(31 sentences)

Sequence

gagccaaaaguucagguggaugaugcuuggcucgagaccauuaaauaugaucauugugauguugaugaugaugaugauaaugauaaugauagUCGGACCAGGCUUCAUUCCCCucaacuuacacguuu
.......(((((.(((.((((((.((((((.((((...(((((..(((.((((((((.((....)).)))))))).)))....)))))....)))).)))))).)))))).))).)))))........

Structure

-gagccaa     c   u      u      c    -gac     --aa   g        g  g 
        aaguu agg ggauga gcuugg ucga    cauua    uau aucauugu au u
        ||||| ||| |||||| |||||| ||||    |||||    ||| |||||||| ||  
        uucaa uCC CUUACU CGGACC GGCU    guaau    aua uaguagua ua u
uuugcaca     c   C      U      A    gaua     agua   g        g  g 

Annotation confidence Low

Genome context

EM:AC189591: 82389-82516 [+]

Mature bna-miR166c

• Accession: MIMAT0005631
• Description: Brassica napus bna-miR166c mature miRNA
• Sequence: 93 - UCGGACCAGGCUUCAUUCCCC - 113
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823