Stem-loop osa-MIR1427

Accession

MI0006967

Description

Oryza sativa osa-MIR1427 precursor miRNA

Literature search

4 open access papers mention osa-MIR1427
(16 sentences)

Sequence

uggcugcgcgcgaccgcgccgucccgcaggccagcgccgcgccaccgcgcgguuccgcagcagggacaugcgccacccguuacagccaacugaaaucugcacugauuugauuacaugcgcacguauauaugcagugcaugcagcgagugugcgcuguuccuggauucggucgcgcguggccgugcUGCGGAACCGUGCGGUGGCGCggcgccggccugcgggaccgcgcagucgcgcgcagccaagccacgggaccg
((((((((((((((.((((.((((((((((((.(((((((((((((((((((((((((((((.((.(((((((.(((.....(((.....(.(((((......))))).)...(((((((..(((....))).)))))))(((((......)))))...))).....))).))))))).)).))))))))))))))))))))))))))))).)))))))))))).)))).)))))))))))))).............

Structure

-------------              c    c            a                             g  a       c   cguua   ccaacugaaaucugcacugauuugauua       ac   u 
             uggcugcgcgcgac gcgc gucccgcaggcc gcgccgcgccaccgcgcgguuccgcagca gg caugcgc acc     cag                            caugcgc  gua a
             |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||     |||                            |||||||  |||  
             accgacgcgcgcug cgcg cagggcguccgg cgcggCGCGGUGGCGUGCCAAGGCGUcgu cc gugcgcg ugg     guc                            guacgug  cgu u
gccagggcaccga              a    c            c                             g  g       c   cuuag   ---------cuugucgcgugugagcgac       -a   a 

Annotation confidence Not enough data

Genome context

Chr8: 9192581-9192837 [+]

Mature osa-miR1427

• Accession: MIMAT0005961
• Description: Oryza sativa osa-miR1427 mature miRNA
• Sequence: 186 - UGCGGAACCGUGCGGUGGCGC - 206
• Evidence: experimental ; MPSS [1], Northern [1], cloned [2]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956