Stem-loop osa-MIR1431

Accession

MI0006971

Description

Oryza sativa osa-MIR1431 precursor miRNA

Literature search

3 open access papers mention osa-MIR1431
(5 sentences)

Sequence

27 reads, 24 reads per million, 2 experiments

gggauucagaaaggaaagacuuaggguugcaagcgggucaacccgugaacccgcuuauaggcaaaauuaguagguaacccguauaaaugaguuuauggaucgacccacuugcaucucuaagugcggcaaaucggaccacgacgugaaaacacacggguuaucacuuauuuuacauauaaguaggUUUGCGAGUUGGCCCGCUUGCaucccuagaugccgucuuagcucuuaacaagcaug
...........((..(((((((((((.(((((((((((((((.((((((((.(((((((.(.(((((.(((.((((((((((........(((..(((.((((((((((((......)))))).))....)))).))).)))(((....)))))))))))))))).))))).).))))))).)))))))).))))))))))))))).)))))).....)))))..)).............

Structure

--gggauucagaa  ga     -----      u               c        c       g c     u   a          --auaaauga   ua   a    ----  -      ca 
             ag  aagac     uuaggg ugcaagcgggucaac cgugaacc gcuuaua g aaaau agu gguaacccgu          guu  ugg ucga    cc cacuug  u
             ||  |||||     |||||| ||||||||||||||| |||||||| ||||||| | ||||| ||| ||||||||||          |||  ||| ||||    || ||||||   
             uc  uucug     gauccc aCGUUCGCCCGGUUG GCGUUUgg ugaauau c uuuua uca cuauugggca          cag  acc ggcu    gg gugaau  c
guacgaacaauuc  ga     ccgua      u               A        a       a a     u   -          cacaaaagug   -c   a    aaac  c      cu 

Annotation confidence Not enough data

Genome context

Chr1: 4766320-4766559 [-]

Mature osa-miR1431

• Accession: MIMAT0005965
• Description: Oryza sativa osa-miR1431 mature miRNA
• Sequence: 185 - UUUGCGAGUUGGCCCGCUUGC - 205
• Evidence: experimental ; MPSS [1], Northern [1], cloned [2]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956