Stem-loop osa-MIR1435

Accession

MI0007021

Description

Oryza sativa osa-MIR1435 precursor miRNA

Literature search

3 open access papers mention osa-MIR1435
(4 sentences)

Sequence

1784 reads, 9.0 reads per million, 118 experiments

acuuuucuuaagucaaacuuuuuuuuagauuugaucAAAUUUAUAAAAAAAAUAuagcaauauuuuuagaaaaaaauauguucaauauuaaauguaaugaaacuaauuuggugcuauaacuguuuuuauauuuuucuauaauaaauuugauuaaacuUUGAAGUAGUUUGACUUaaaaaaagu
((((((.((((((((((((.((((..((.(((((((((((((((...((((((((((.((((.((.(((....((((...((((.(((.....))).))))....))))....))).)).)))).)))))))))).....)))))))))))))))))..)))).)))))))))))).))))))

Structure

      c            u    uu  a               --AAA          c    u  u   aaaa    -aug    a   u 
acuuuu uuaagucaaacu uuuu  ag uuugaucAAAUUUAU     AAAAAUAuag aaua uu uag    aaau    uuca uau a
|||||| |||||||||||| ||||  || |||||||||||||||     |||||||||| |||| || |||    ||||    |||| ||| a
ugaaaa aaUUCAGUUUGA GAAG  uc aaauuaguuuaaaua     uuuuuauauu uugu aa auc    uuua    aagu aug a
      a            U    UU  -               auauc          u    c  u   gugg    auca    a   u 

Annotation confidence Low

Genome context

1: 29289280-29289462 [-]

Mature osa-miR1435-5p

• Accession: MIMAT0056031
• Description: Oryza sativa osa-miR1435-5p mature miRNA
• Sequence: 37 - AAAUUUAUAAAAAAAAUA - 54
• Evidence: experimental ; unknown

Mature osa-miR1435-3p

• Accession: MIMAT0005986
• Description: Oryza sativa osa-miR1435-3p mature miRNA
• Sequence: 158 - UUGAAGUAGUUUGACUU - 174
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25