Stem-loop mdo-mir-1542-2

Accession

MI0007266

Description

Monodelphis domestica mdo-mir-1542-2 precursor miRNA

Sequence

121857 reads, 2584.0 reads per million, 5 experiments

uaguacagugcCUGGCACAUAGGAGCUUCAUAAauguguguugauuuauuUAUUGAUCUCCAAUGCCUAGCAcugugccu
..(((((((((..((((....((((..(((((((((.((....)).)))))).))).))))..))))..)))))))))..

Structure

ua         CU    CAUA    CU   -      u  g 
  guacagugc  GGCA    GGAG  UCA UAAaug gu u
  |||||||||  ||||    ||||  ||| |||||| ||  
  cgugucACG  CCGU    CCUC  AGU AUuuau ua u
uc         AU    --AA    -U   U      u  g 

Annotation confidence High

Comments

This sequence is referred to by the unofficial identifier Mdo-172b in [1].

Genome context

ref|NC_077234.2|: 95799860-95799939 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-1542-2

Mature mdo-miR-1542-2-5p

• Accession: MIMAT0031061
• Description: Monodelphis domestica mdo-miR-1542-2-5p mature miRNA
• Sequence: 12 - CUGGCACAUAGGAGCUUCAUAA - 33
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-1542-3p

• Accession: MIMAT0006141
• Description: Monodelphis domestica mdo-miR-1542-3p mature miRNA
• Sequence: 51 - UAUUGAUCUCCAAUGCCUAGCA - 72
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45