Stem-loop mdo-mir-1543

Accession

MI0007267

Description

Monodelphis domestica mdo-mir-1543 precursor miRNA

Sequence

899 reads, 32.0 reads per million, 3 experiments

gauagugcUUUGCACCACUGAGAGUGGAUUAacuuccuuuaugaagUUAGUCCUAGUCUAGGUGCACAcauguc
(((((((...((((((....(((.((((((((((((......))))))))))).).))).))))))))).))))

Structure

    -   cUU      ACUG   G -           cu 
gaua gug   UGCACC    AGA U GGAUUAacuuc  u
|||| |||   ||||||    ||| | |||||||||||   
cugu cAC   ACGUGG    UCU A CCUGAUUgaag  u
    a   ---      ---A   G U           ua 

Annotation confidence High

Comments

This sequence is referred to by the unofficial identifier Mdo-174 in [1].

Genome context

ref|NC_077227.1|: 337329441-337329514 [+]

Mature mdo-miR-1543-5p

• Accession: MIMAT0051600
• Description: Monodelphis domestica mdo-miR-1543-5p mature miRNA
• Sequence: 9 - UUUGCACCACUGAGAGUGGAUUA - 31
• Evidence: experimental ; cloned [1]

Mature mdo-miR-1543-3p

• Accession: MIMAT0006142
• Description: Monodelphis domestica mdo-miR-1543-3p mature miRNA
• Sequence: 47 - UUAGUCCUAGUCUAGGUGCACA - 68
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72