Stem-loop mdo-mir-340

Accession

MI0007268

Description

Monodelphis domestica mdo-mir-340 precursor miRNA

Sequence

28344 reads, 424 reads per million, 5 experiments

uggacggugaucaaggugugacuauaAAGUAAUGAGAUUGAUUUCUGUgguauaguaaauGGAAAUCAGUUUCAUUACCUUAcagucacaucuaaucuucu
.....((.(((..((((((((((.(((.((((((((((((((((((((..........)))))))))))))))))))).))).)))))))))).))).)).

Structure

uggac  u   ca          a   A                    ggua 
     gg gau  aggugugacu uaA GUAAUGAGAUUGAUUUCUGU    u
     || |||  |||||||||| ||| ||||||||||||||||||||     
     cu cua  ucuacacuga AUU CAUUACUUUGACUAAAGGua    a
----u  u   -a          c   C                    aaug 

Annotation confidence Medium

Comments

This sequence is referred to by the unofficial identifier Mdo-182 in [1].

Genome context

chr1: 72640994-72641094 [+]

Mature mdo-miR-340-5p

• Accession: MIMAT0006143
• Description: Monodelphis domestica mdo-miR-340-5p mature miRNA
• Sequence: 27 - AAGUAAUGAGAUUGAUUUCUGU - 48
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdo-miR-340-3p

• Accession: MIMAT0026767
• Description: Monodelphis domestica mdo-miR-340-3p mature miRNA
• Sequence: 61 - GGAAAUCAGUUUCAUUACCUUA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45