Stem-loop mdo-mir-1544a

Accession

MI0007269

Description

Monodelphis domestica mdo-mir-1544a precursor miRNA

Sequence

36336 reads, 634 reads per million, 5 experiments

agcagcugccccUGCACCCAGGGAUAGGAUAGCGguucacuuggaagcccCCUUUUCUAUCCCUGGUACUGGCgccgcugcu
((((((.((.((.....((((((((((((.((.((((........))))..)).))))))))))))....)).)).))))))

Structure

      u  c  UGCAC            U  -C    cac 
agcagc gc cc     CCAGGGAUAGGA AG  Gguu   u
|||||| || ||     |||||||||||| ||  ||||    
ucgucg cg GG     GGUCCCUAUCUU UC  ccga   u
      c  C  -UCAU            U  Cc    agg 

Annotation confidence Medium

Comments

This sequence is referred to by the unofficial identifier Mdo-202a in [1].

Genome context

chrX: 14005428-14005509 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdo-mir-1544a

Mature mdo-miR-1544a-5p

• Accession: MIMAT0006144
• Description: Monodelphis domestica mdo-miR-1544a-5p mature miRNA
• Sequence: 13 - UGCACCCAGGGAUAGGAUAGCG - 34
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdo-miR-1544a-3p

• Accession: MIMAT0026768
• Description: Monodelphis domestica mdo-miR-1544a-3p mature miRNA
• Sequence: 51 - CCUUUUCUAUCCCUGGUACUGGC - 73
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45