Stem-loop mdo-mir-1546

Accession

MI0007271

Description

Monodelphis domestica mdo-mir-1546 precursor miRNA

Sequence

129991 reads, 2177 reads per million, 5 experiments

augccuugccggaaaUCAGGGAUUCUCAGGGAUGGAAgugagacaaaauaccuuCCACCUCUCAGAAUCCCUAUUUucuuucaaggccc
..((((((..(((((..(((((((((.((((.((((((.............)))))).)))).)))))))))..)))))..))))))..

Structure

au      cc     UC         C    A      ugaga 
  gccuug  ggaaa  AGGGAUUCU AGGG UGGAAg     c
  ||||||  |||||  ||||||||| |||| ||||||     a
  cggaac  ucuUU  UCCCUAAGA UCUC ACCuuc     a
cc      uu     UA         C    C      cauaa 

Annotation confidence High

Comments

This sequence is referred to by the unofficial identifier Mdo-254 in [1].

Genome context

chr3: 518067372-518067460 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-1546

Mature mdo-miR-1546-5p

• Accession: MIMAT0006146
• Description: Monodelphis domestica mdo-miR-1546-5p mature miRNA
• Sequence: 16 - UCAGGGAUUCUCAGGGAUGGAA - 37
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdo-miR-1546-3p

• Accession: MIMAT0026770
• Description: Monodelphis domestica mdo-miR-1546-3p mature miRNA
• Sequence: 55 - CCACCUCUCAGAAUCCCUAUUU - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45