Stem-loop mdo-mir-1547

Accession

MI0007272

Description

Monodelphis domestica mdo-mir-1547 precursor miRNA

Sequence

164134 reads, 2855 reads per million, 5 experiments

uaaagaacguaugaugUAUCAGAGUCUUGGGUCCUUGUguagaugcuuugagacuuCAAGGAUCCCUGACUUGAUCAUuguggguucuccc
...(((((.(((((((.((((.((((..(((((((((.((............))..)))))))))..))))))))))))))).)))))...

Structure

uaa     g       U    G    UU         -U  agaug 
   agaac uaugaug AUCA AGUC  GGGUCCUUG  gu     c
   ||||| ||||||| |||| ||||  |||||||||  ||      
   ucuug guguUAC UAGU UCAG  CCUAGGAAC  ca     u
ccc     g       -    -    UC         uu  gaguu 

Annotation confidence Medium

Comments

This sequence is referred to by the unofficial identifier Mdo-302 in [1].

Genome context

chr4: 335163695-335163785 [-]

Mature mdo-miR-1547-5p

• Accession: MIMAT0006147
• Description: Monodelphis domestica mdo-miR-1547-5p mature miRNA
• Sequence: 17 - UAUCAGAGUCUUGGGUCCUUGU - 38
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdo-miR-1547-3p

• Accession: MIMAT0026771
• Description: Monodelphis domestica mdo-miR-1547-3p mature miRNA
• Sequence: 57 - CAAGGAUCCCUGACUUGAUCAU - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45