Stem-loop cel-mir-1817

Accession

MI0007979

Description

Caenorhabditis elegans cel-mir-1817 precursor miRNA

Sequence

195 reads, 14 reads per million, 10 experiments

uguacauuucaauuuucgagUAGCCAAUGUCUUCUCUAUCAUGcauuuuacaaauaaugaguacaugauagugaaauauuugcuuccugaauuucagagauguuu
...(((((((....((((.(.(((.(((((.(((.((((((((.((((..........)))).)))))))).)))))))).))).).)))).....)))))))..

Structure

ugu       -aauu    a U   C     C   U        c    uaca 
   acauuuc     uucg g AGC AAUGU UUC CUAUCAUG auuu    a
   |||||||     |||| | ||| ||||| ||| |||||||| ||||     
   uguagag     aagu c ucg uuaua aag gauaguac ugag    a
-uu       acuuu    c u   u     -   u        a    uaau 

Annotation confidence Low

Comments

This sequence was erroneously named mir-801 in [1].

Genome context

chrI: 10869370-10869474 [-]

Mature cel-miR-1817

• Accession: MIMAT0006584
• Description: Caenorhabditis elegans cel-miR-1817 mature miRNA
• Sequence: 21 - UAGCCAAUGUCUUCUCUAUCAUG - 43
• Evidence: experimental ; 454 [1-2], Illumina [3]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415


3. PubMed ID: 18042455
   Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2
   "Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M"
   "Mol Cell (2007) 28:598-613