Stem-loop cel-mir-1822

Accession

MI0007984

Description

Caenorhabditis elegans cel-mir-1822 precursor miRNA mir-1822

Gene
family

RF03368; mir-1822

Sequence

447 reads, 10 reads per million, 13 experiments

auucuugaaaacuccaauAGUUUCUCUGGGAAAGCUAUCGGCcaaauuuaacuguccGAGCUGCCCUCAGAAAAACUCUuggcucaucgagaaa
.(((((((.....((((.(((((.((((((..(((..((((.((........)).)))))))..)).)))).))))).))))....))))))).

Structure

a       aaacu    u     C    -  AA   UA    C  aau 
 uucuuga     ccaa AGUUU UCUG GG  AGC  UCGG ca   u
 |||||||     |||| ||||| |||| ||  |||  |||| ||    
 aagagcu     gguU UCAAA AGAC CC  UCG  AGcc gu   u
a       -acuc    C     A    U  CG   --    u  caa 

Annotation confidence Medium

Comments

This sequence was erroneously named mir-807 in [1].

Genome context

chrII: 6015534-6015627 [+]

Mature cel-miR-1822-5p

• Accession: MIMAT0015266
• Description: Caenorhabditis elegans cel-miR-1822-5p mature miRNA
• Sequence: 19 - AGUUUCUCUGGGAAAGCUAUCGGC - 42
• Evidence: experimental ; CLIPseq [4]

Mature cel-miR-1822-3p

• Accession: MIMAT0006589
• Description: Caenorhabditis elegans cel-miR-1822-3p mature miRNA
• Sequence: 58 - GAGCUGCCCUCAGAAAAACUCU - 79
• Evidence: experimental ; 454 [1-2], Illumina [3], CLIPseq [4]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


3. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415


4. PubMed ID: 18042455
   Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2
   "Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M"
   "Mol Cell (2007) 28:598-613