Stem-loop cfa-mir-216b

Accession

MI0007987

Description

Canis lupus familiaris cfa-mir-216b precursor miRNA

Sequence

129171 reads, 82.0 reads per million, 43 experiments

AAAUCUCUGCAGGCAAAUGUGAugucacuaaagaaaucacACACUUACCCGUAGAGAUUCUG
.(((((((((.((.((.((((((.((......)).))))))...)).)).)))))))))...

Structure

--A         A  C  --A      g  ac 
   AAUCUCUGC GG AA   UGUGAu uc  u
   ||||||||| || ||   |||||| ||   
   UUAGAGAUG CC UU   Acacua ag  a
GUC         C  A  CAC      a  aa 

Annotation confidence High

Genome context

10: 57777763-57777824 [-]

Mature cfa-miR-216b-5p

• Accession: MIMAT0006592
• Description: Canis lupus familiaris cfa-miR-216b-5p mature miRNA
• Sequence: 1 - AAAUCUCUGCAGGCAAAUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-216b-3p

• Accession: MIMAT0051699
• Description: Canis lupus familiaris cfa-miR-216b-3p mature miRNA
• Sequence: 41 - ACACUUACCCGUAGAGAUUCUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415