Stem-loop cfa-let-7a-1

Accession

MI0007989

Description

Canis lupus familiaris cfa-let-7a-1 precursor miRNA

Literature search

2 open access papers mention cfa-let-7a-1
(5 sentences)

Sequence

13833778 reads, 23570.0 reads per million, 82 experiments

UGAGGUAGUAGGUUGUAUAGUUuggggcucugcccugcucuggguaaCUAUACAAUCUACUGUCUUUCC
.(((((((((((((((((((((((((((........))))))...)))))))))))))))))))))...

Structure

--U                     ---      ucu 
   GAGGUAGUAGGUUGUAUAGUU   uggggc   g
   |||||||||||||||||||||   ||||||    
   UUCUGUCAUCUAACAUAUCaa   gucucg   c
CCU                     ugg      ucc 

Annotation confidence High

Genome context

10: 20768084-20768152 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-let-7a-1

Mature cfa-let-7a-5p

• Accession: MIMAT0006594
• Description: Canis lupus familiaris cfa-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: not_experimental

Mature cfa-let-7a-1-3p

• Accession: MIMAT0051701
• Description: Canis lupus familiaris cfa-let-7a-1-3p mature miRNA
• Sequence: 48 - CUAUACAAUCUACUGUCUUUCC - 69
• Evidence: not_experimental

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415