Stem-loop cfa-mir-1835

Accession

MI0007991

Description

Canis lupus familiaris cfa-mir-1835 precursor miRNA

Literature search

1 open access papers mention cfa-mir-1835
(1 sentences)

Sequence

49842 reads, 38.0 reads per million, 50 experiments

UGCACCCUGAGAGCUGGAGCAGgucucuuacgggaaccAUCUUCAACUCUGUGGAUGCAGg
((((.((..((((.(((((..((((((....))).)))..))))).))))..)).))))..

Structure

--    C  UG    C     CA   -   u 
  UGCA CC  AGAG UGGAG  Ggu cuc u
  |||| ||  |||| |||||  ||| |||  
  ACGU GG  UCUC ACUUC  cca ggg a
gG    A  UG    A     UA   a   c 

Annotation confidence High

Genome context

10: 28088424-28088484 [+]

Mature cfa-miR-1835-5p

• Accession: MIMAT0006596
• Description: Canis lupus familiaris cfa-miR-1835-5p mature miRNA
• Sequence: 1 - UGCACCCUGAGAGCUGGAGCAG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1835-3p

• Accession: MIMAT0051705
• Description: Canis lupus familiaris cfa-miR-1835-3p mature miRNA
• Sequence: 39 - AUCUUCAACUCUGUGGAUGCAG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415