Stem-loop cfa-mir-204

Accession

MI0007993

Description

Canis lupus familiaris cfa-mir-204 precursor miRNA

Literature search

9 open access papers mention cfa-mir-204
(158 sentences)

Sequence

597318 reads, 2177.0 reads per million, 79 experiments

UUCCCUUUGUCAUCCUAUGCCUGagaauauaugaaggagGCUGGGAAGGCAAAGGGACGU
.((((((((((.(((((.((((...............))))))))).))))))))))...

Structure

--U          A     U    Gagaau 
   UCCCUUUGUC UCCUA GCCU      a
   |||||||||| ||||| ||||      u
   AGGGAAACGG AGGGU CGga      a
UGC          A     -    ggaagu 

Annotation confidence High

Genome context

1: 87271368-87271427 [+]

Mature cfa-miR-204-5p

• Accession: MIMAT0006598
• Description: Canis lupus familiaris cfa-miR-204-5p mature miRNA
• Sequence: 1 - UUCCCUUUGUCAUCCUAUGCCUG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-204-3p

• Accession: MIMAT0051707
• Description: Canis lupus familiaris cfa-miR-204-3p mature miRNA
• Sequence: 40 - GCUGGGAAGGCAAAGGGACGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415