Stem-loop cfa-mir-31

Accession

MI0007994

Description

Canis lupus familiaris cfa-mir-31 precursor miRNA

Literature search

10 open access papers mention cfa-mir-31
(21 sentences)

Sequence

127585 reads, 119.0 reads per million, 77 experiments

AGGCAAGAUGCUGGCAUAGCUGuugaacugagaaccUGCUAUGCCAACAUAUUGCCAUC
.(((((.(((.(((((((((.(((........)))..))))))))).))).)))))...

Structure

--A     G   C         -U   gaa 
   GGCAA AUG UGGCAUAGC  Guu   c
   ||||| ||| |||||||||  |||    
   CCGUU UAC ACCGUAUCG  caa   u
CUA     A   A         Uc   gag 

Annotation confidence High

Genome context

11: 41846612-41846670 [-]

Mature cfa-miR-31-5p

• Accession: MIMAT0006599
• Description: Canis lupus familiaris cfa-miR-31-5p mature miRNA
• Sequence: 1 - AGGCAAGAUGCUGGCAUAGCUG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-31-3p

• Accession: MIMAT0051708
• Description: Canis lupus familiaris cfa-miR-31-3p mature miRNA
• Sequence: 37 - UGCUAUGCCAACAUAUUGCCAUC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415