Stem-loop cfa-mir-371

Accession

MI0007996

Description

Canis lupus familiaris cfa-mir-371 precursor miRNA

Literature search

4 open access papers mention cfa-mir-371
(7 sentences)

Sequence

2134 reads, 7.0 reads per million, 67 experiments

ACUCAAAAAAUGGCGGCACUUUccuaccuagaacagaAAGUGCCCCCACAGUUUGAGUGg
(((((((...(((.(((((((((............))))))))).)))...)))))))..

Structure

--       AAA   C         cuacc 
  ACUCAAA   UGG GGCACUUUc     u
  |||||||   ||| |||||||||      
  UGAGUUU   ACC CCGUGAAag     a
gG       GAC   C         acaag 

Annotation confidence High

Comments

This sequence appears to be antisense to the annotated members of the mir-371 family in oter mammals. The orientation of the dog sequence here is supported by 66 miR reads and 2 miR* reads [1].

Genome context

1: 104061728-104061787 [+]

Mature cfa-miR-371-5p

• Accession: MIMAT0007747
• Description: Canis lupus familiaris cfa-miR-371-5p mature miRNA
• Sequence: 1 - ACUCAAAAAAUGGCGGCACUUU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-371-3p

• Accession: MIMAT0051709
• Description: Canis lupus familiaris cfa-miR-371-3p mature miRNA
• Sequence: 38 - AAGUGCCCCCACAGUUUGAGUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415