Stem-loop cfa-mir-150

Accession

MI0007998

Description

Canis lupus familiaris cfa-mir-150 precursor miRNA

Literature search

15 open access papers mention cfa-mir-150
(40 sentences)

Sequence

1212236 reads, 876.0 reads per million, 74 experiments

UCUCCCAACCCUUGUACCAGUGcugugccucaguccCUGGUACAGGCAUGGGGGGCA
.((((((..(((.(((((((.((((.....))))..))))))))))..))))))...

Structure

--U      AC   U       -U    u 
   CUCCCA  CCU GUACCAG  Gcug g
   ||||||  ||| |||||||  |||| c
   GGGGGU  GGA CAUGGUC  ugac c
ACG      AC   -       cc    u 

Annotation confidence High

Genome context

1: 107518817-107518873 [+]

Mature cfa-miR-150-5p

• Accession: MIMAT0006602
• Description: Canis lupus familiaris cfa-miR-150-5p mature miRNA
• Sequence: 1 - UCUCCCAACCCUUGUACCAGUG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-150-3p

• Accession: MIMAT0051711
• Description: Canis lupus familiaris cfa-miR-150-3p mature miRNA
• Sequence: 37 - CUGGUACAGGCAUGGGGGGCA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415