Stem-loop cfa-mir-455

Accession

MI0007999

Description

Canis lupus familiaris cfa-mir-455 precursor miRNA

Literature search

2 open access papers mention cfa-mir-455
(7 sentences)

Sequence

190743 reads, 219.0 reads per million, 82 experiments

UAUGUGCCUUUGGACUACAUCGUggaagccagcaccAUGCAGUCCAUGGGCAUAUACA
(((((((((.((((((.(((.(((........))).))).)))))).)))))))))..

Structure

--         U      A   C   gaa 
  UAUGUGCCU UGGACU CAU GUg   g
  ||||||||| |||||| ||| |||    
  AUAUACGGG ACCUGA GUA cac   c
AC         U      C   c   gac 

Annotation confidence High

Genome context

11: 69585477-69585534 [+]

Mature cfa-miR-455-5p

• Accession: MIMAT0006603
• Description: Canis lupus familiaris cfa-miR-455-5p mature miRNA
• Sequence: 1 - UAUGUGCCUUUGGACUACAUCGU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-455-3p

• Accession: MIMAT0051712
• Description: Canis lupus familiaris cfa-miR-455-3p mature miRNA
• Sequence: 37 - AUGCAGUCCAUGGGCAUAUACA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415