Stem-loop cfa-mir-30a

Accession

MI0008000

Description

Canis lupus familiaris cfa-mir-30a precursor miRNA

Literature search

17 open access papers mention cfa-mir-30a
(21 sentences)

Sequence

10183152 reads, 19488.0 reads per million, 82 experiments

UGUAAACAUCCUCGACUGGAAGCUgugaagccacagaugggCUUUCAGUCGGAUGUUUGCAGC
(((((((((((..((((((((((((((....))).....))))))))))))))))))))))..

Structure

--           UC           -----   a 
  UGUAAACAUCC  GACUGGAAGCU     gug a
  |||||||||||  |||||||||||     |||  
  ACGUUUGUAGG  CUGACUUUCgg     cac g
CG           --           guaga   c 

Annotation confidence High

Genome context

12: 34324114-34324176 [-]

Mature cfa-miR-30a-5p

• Accession: MIMAT0006604
• Description: Canis lupus familiaris cfa-miR-30a-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUCGACUGGAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-30a-3p

• Accession: MIMAT0051713
• Description: Canis lupus familiaris cfa-miR-30a-3p mature miRNA
• Sequence: 42 - CUUUCAGUCGGAUGUUUGCAGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415