Stem-loop cfa-mir-30c-2

Accession

MI0008001

Description

Canis lupus familiaris cfa-mir-30c-2 precursor miRNA

Literature search

3 open access papers mention cfa-mir-30c-2
(8 sentences)

Sequence

3858521 reads, 5075.0 reads per million, 82 experiments

UGUAAACAUCCUACACUCUCAGCUguggaaaguaagaaagCUGGGAGAAGGCUGUUUACUCU
.(((((((.(((...(((((((((..............))))))))).))).)))))))...

Structure

--U       U   ACA         guggaa 
   GUAAACA CCU   CUCUCAGCU      a
   ||||||| |||   |||||||||       
   CAUUUGU GGA   GAGGGUCga      g
UCU       C   --A         aagaau 

Annotation confidence High

Genome context

12: 34298119-34298180 [-]

Mature cfa-miR-30c-5p

• Accession: MIMAT0006605
• Description: Canis lupus familiaris cfa-miR-30c-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-30c-2-3p

• Accession: MIMAT0051714
• Description: Canis lupus familiaris cfa-miR-30c-2-3p mature miRNA
• Sequence: 41 - CUGGGAGAAGGCUGUUUACUCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415